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ABSTRACT   REFERENCES  
Journal of Bioinformatics and Research 1(1) 2012: 15-20

Influence of Blast, Fasta and Wu-Blast algorithms on sequence alignments and 3-D structure prediction of DPP-IV


P. Kanchanamala1*, Appa Rao Allam2, P. Srinivasa Rao3, G. R. Sridhar4

1Department of Information Technology, Dadi Institute of Engineering & Technology, NH-5, Anakapalle, Visakhapatnam, India.
2Vice-Chancellor, Jawaharlal Nehru Technological University Kakinada, Kakinada, India.
3Prof, Department of CS & SE, College of Engineering, Andhra University, India.
4MD, Endocrine & Diabetes Centre, Visakhapatnam, India.

* To whom correspondence should be addressed. Email: kanchanakanta@gmail.com

REFERENCES

  1. Gupta R, Walunj SS, Tokala RK et al. (2009) Emerging drug candidates of dipeptidyl peptidase IV (DPP IV) inhibitor class for the treatment of Type 2 Diabetes. Curr Drug Targets. 10: 71-87.
  2. Pratley RE and Salsali A. (2007) Inhibition of DPP-4: a new therapeutic approach for the treatment of type 2 diabetes. Curr Med Res Opin. 23: 919-931.
  3. Gorrell MD. (2005) Dipeptidyl peptidase IV and related enzymes in cell biology and liver disorders. Clin Sci (Lond). 2005 108: 277-292.
  4. Barnett A. (2006) DPP-4 inhibitors and their potential role in the management of type 2 diabetes. Int J Clin Pract. 60: 1454-1470
  5. Altschul SF, Gish W, Miller W et al. (1990) Basic local alignment search tool. J Mol Biol. 215: 403-410
  6. Pearson W. (2004) Finding protein and nucleotide similarities with FASTA. Curr Protoc Bioinformatics. Chapter 3:Unit3.9
  7. Chenna R, Sugawara H, Koike T et al. (2003) Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 31: 3497-3500
  8. Boutet E, Lieberherr D, Tognolli M et al. (2007) UniProtKB/Swiss-Prot. Methods Mol Biol. 406: 89-112.
  9. http://www.rcsb.org/pdb
  10. http://www.salilab.org
  11. Gonnet GH, Cohen MA and Benner SA (1992) Exhaustive matching of the entire protein sequence database. Science 256: 1443-1445.



Copyright © 2012 | AIZEON publishers | All rights reserved

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Citation: Kanchanamala P, Allam AR, Rao PS and Sridhar GR (2012). Influence of Blast, Fasta and Wu-Blast algorithms on sequence alignments and 3-D structure prediction of DPP-IV. Journal of Bioinformatics and Research 1(1): 15-20

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